Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PEX3P56589 SNX33P1-201ENST00000592116 1762 ntBASIC18.5■□□□□ 0.55
PEX3P56589 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.5■□□□□ 0.55
PEX3P56589 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PEX3P56589 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PEX3P56589 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.49■□□□□ 0.55
PEX3P56589 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PEX3P56589 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PEX3P56589 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PEX3P56589 RNU1-129P-201ENST00000384064 167 ntBASIC18.49■□□□□ 0.55
PEX3P56589 GPX1P2-201ENST00000429271 606 ntBASIC18.49■□□□□ 0.55
PEX3P56589 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.49■□□□□ 0.55
PEX3P56589 ALG1L5P-201ENST00000482043 771 ntBASIC18.49■□□□□ 0.55
PEX3P56589 AC112482.1-201ENST00000492080 688 ntBASIC18.49■□□□□ 0.55
PEX3P56589 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.49■□□□□ 0.55
PEX3P56589 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.49■□□□□ 0.55
PEX3P56589 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.49■□□□□ 0.55
PEX3P56589 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.49■□□□□ 0.55
PEX3P56589 U1.21-201ENST00000580816 167 ntBASIC18.49■□□□□ 0.55
PEX3P56589 AC091812.2-201ENST00000619081 385 ntBASIC18.49■□□□□ 0.55
PEX3P56589 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.49■□□□□ 0.55
PEX3P56589 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.49■□□□□ 0.55
PEX3P56589 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.49■□□□□ 0.55
PEX3P56589 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.49■□□□□ 0.55
PEX3P56589 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PEX3P56589 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.49■□□□□ 0.55
PEX3P56589 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PEX3P56589 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PEX3P56589 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PEX3P56589 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.48■□□□□ 0.55
PEX3P56589 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.48■□□□□ 0.55
PEX3P56589 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.48■□□□□ 0.55
PEX3P56589 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PEX3P56589 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 RPSAP43-201ENST00000402237 625 ntBASIC18.48■□□□□ 0.55
PEX3P56589 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.48■□□□□ 0.55
PEX3P56589 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.48■□□□□ 0.55
PEX3P56589 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.48■□□□□ 0.55
PEX3P56589 UPF3AP3-201ENST00000420996 769 ntBASIC18.48■□□□□ 0.55
PEX3P56589 FAM58CP-201ENST00000435741 640 ntBASIC18.48■□□□□ 0.55
PEX3P56589 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.48■□□□□ 0.55
PEX3P56589 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PEX3P56589 AL031055.1-201ENST00000606362 631 ntBASIC18.48■□□□□ 0.55
PEX3P56589 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.48■□□□□ 0.55
PEX3P56589 C20orf181-201ENST00000623918 480 ntBASIC18.48■□□□□ 0.55
PEX3P56589 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.48■□□□□ 0.55
PEX3P56589 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.48■□□□□ 0.55
PEX3P56589 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PEX3P56589 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
PEX3P56589 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
PEX3P56589 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.47■□□□□ 0.55
PEX3P56589 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PEX3P56589 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.47■□□□□ 0.55
PEX3P56589 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.47■□□□□ 0.55
PEX3P56589 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.47■□□□□ 0.55
PEX3P56589 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PEX3P56589 MIR3687-2-201ENST00000577708 61 ntBASIC18.47■□□□□ 0.55
PEX3P56589 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.47■□□□□ 0.55
PEX3P56589 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.47■□□□□ 0.55
PEX3P56589 MIR3687-1-201ENST00000614492 61 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms