Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 DUX4L17-201ENST00000557360 1267 ntBASIC16.56■□□□□ 0.24
PKNOX1P55347 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 AC004817.3-201ENST00000602957 2129 ntBASIC16.56■□□□□ 0.24
PKNOX1P55347 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.56■□□□□ 0.24
PKNOX1P55347 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 AC022188.1-201ENST00000620960 1664 ntBASIC16.56■□□□□ 0.24
PKNOX1P55347 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 AP002414.1-201ENST00000391405 1147 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 LINC00982-205ENST00000420957 435 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 MIR5100-201ENST00000579544 119 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 AC069148.1-201ENST00000608741 768 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 NPAP1P7-201ENST00000613027 823 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.55■□□□□ 0.24
PKNOX1P55347 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PKNOX1P55347 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 AL645728.1-201ENST00000366221 2101 ntBASIC16.55■□□□□ 0.24
PKNOX1P55347 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
PKNOX1P55347 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PKNOX1P55347 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.54■□□□□ 0.24
PKNOX1P55347 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 HLA-A-202ENST00000376806 1854 ntBASIC16.54■□□□□ 0.24
PKNOX1P55347 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.54■□□□□ 0.24
PKNOX1P55347 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.54■□□□□ 0.24
PKNOX1P55347 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.54■□□□□ 0.24
PKNOX1P55347 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.54■□□□□ 0.24
PKNOX1P55347 AC099336.1-202ENST00000602961 463 ntBASIC16.54■□□□□ 0.24
PKNOX1P55347 AC010331.1-201ENST00000611423 582 ntBASIC16.54■□□□□ 0.24
PKNOX1P55347 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PKNOX1P55347 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
PKNOX1P55347 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.54■□□□□ 0.24
PKNOX1P55347 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PKNOX1P55347 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.53■□□□□ 0.24
PKNOX1P55347 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PKNOX1P55347 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms