Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 AC009113.1-201ENST00000570267 2443 ntBASIC16.59■□□□□ 0.25
CXCL12P48061 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CXCL12P48061 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
CXCL12P48061 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.58■□□□□ 0.25
CXCL12P48061 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.58■□□□□ 0.25
CXCL12P48061 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL12P48061 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CXCL12P48061 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 SLC25A6P5-201ENST00000435663 894 ntBASIC16.58■□□□□ 0.24
CXCL12P48061 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 AC022210.1-201ENST00000449856 793 ntBASIC16.58■□□□□ 0.24
CXCL12P48061 SERBP1P3-201ENST00000459980 809 ntBASIC16.58■□□□□ 0.24
CXCL12P48061 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.58■□□□□ 0.24
CXCL12P48061 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.58■□□□□ 0.24
CXCL12P48061 AC055876.2-201ENST00000531834 546 ntBASIC16.58■□□□□ 0.24
CXCL12P48061 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.58■□□□□ 0.24
CXCL12P48061 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.58■□□□□ 0.24
CXCL12P48061 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.58■□□□□ 0.24
CXCL12P48061 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.58■□□□□ 0.24
CXCL12P48061 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CXCL12P48061 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.58■□□□□ 0.24
CXCL12P48061 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CXCL12P48061 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.57■□□□□ 0.24
CXCL12P48061 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CXCL12P48061 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.57■□□□□ 0.24
CXCL12P48061 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 MEP1AP4-201ENST00000423244 1087 ntBASIC16.57■□□□□ 0.24
CXCL12P48061 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 TTTY23B-201ENST00000442790 549 ntBASIC16.57■□□□□ 0.24
CXCL12P48061 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.57■□□□□ 0.24
CXCL12P48061 AL512361.1-201ENST00000554200 418 ntBASIC16.57■□□□□ 0.24
CXCL12P48061 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.57■□□□□ 0.24
CXCL12P48061 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.57■□□□□ 0.24
CXCL12P48061 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CXCL12P48061 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 AC090340.1-201ENST00000620778 4980 ntBASIC16.56■□□□□ 0.24
CXCL12P48061 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 AC108860.2-201ENST00000562760 2183 ntBASIC16.56■□□□□ 0.24
CXCL12P48061 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CXCL12P48061 SLC25A1P3-201ENST00000395415 828 ntBASIC16.56■□□□□ 0.24
CXCL12P48061 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.56■□□□□ 0.24
CXCL12P48061 AC114501.2-201ENST00000439631 535 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms