Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 AL590787.1-201ENST00000568856 1315 ntBASIC15.88■□□□□ 0.13
SOX3P41225 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SOX3P41225 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.87■□□□□ 0.13
SOX3P41225 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 AC005915.1-201ENST00000624912 2018 ntBASIC15.87■□□□□ 0.13
SOX3P41225 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.87■□□□□ 0.13
SOX3P41225 IGHV3-65-201ENST00000523210 341 ntBASIC15.87■□□□□ 0.13
SOX3P41225 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.87■□□□□ 0.13
SOX3P41225 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SOX3P41225 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 TERC-201ENST00000602385 541 ntBASIC15.87■□□□□ 0.13
SOX3P41225 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SOX3P41225 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.87■□□□□ 0.13
SOX3P41225 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SOX3P41225 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.86■□□□□ 0.13
SOX3P41225 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.86■□□□□ 0.13
SOX3P41225 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
SOX3P41225 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 AP002414.1-201ENST00000391405 1147 ntBASIC15.86■□□□□ 0.13
SOX3P41225 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.86■□□□□ 0.13
SOX3P41225 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.86■□□□□ 0.13
SOX3P41225 AC007967.2-201ENST00000432613 625 ntBASIC15.86■□□□□ 0.13
SOX3P41225 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.86■□□□□ 0.13
SOX3P41225 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.86■□□□□ 0.13
SOX3P41225 MIR4751-201ENST00000578027 74 ntBASIC15.86■□□□□ 0.13
SOX3P41225 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.86■□□□□ 0.13
SOX3P41225 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SOX3P41225 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.86■□□□□ 0.13
SOX3P41225 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 AL603756.1-201ENST00000606511 2163 ntBASIC15.86■□□□□ 0.13
SOX3P41225 PCDHA1-201ENST00000378133 2726 ntBASIC15.86■□□□□ 0.13
SOX3P41225 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.86■□□□□ 0.13
SOX3P41225 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SOX3P41225 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
SOX3P41225 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 AL391005.1-201ENST00000623953 2435 ntBASIC15.85■□□□□ 0.13
SOX3P41225 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.85■□□□□ 0.13
SOX3P41225 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SOX3P41225 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms