Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
MSX2P35548 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.11■□□□□ 0.17
MSX2P35548 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.11■□□□□ 0.17
MSX2P35548 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.11■□□□□ 0.17
MSX2P35548 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.11■□□□□ 0.17
MSX2P35548 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.11■□□□□ 0.17
MSX2P35548 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
MSX2P35548 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.11■□□□□ 0.17
MSX2P35548 TUBB8P12-201ENST00000308911 1335 ntBASIC16.11■□□□□ 0.17
MSX2P35548 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 TUBB7P-202ENST00000428444 1305 ntBASIC16.11■□□□□ 0.17
MSX2P35548 TUBB8P7-204ENST00000567960 1332 ntBASIC16.11■□□□□ 0.17
MSX2P35548 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
MSX2P35548 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.11■□□□□ 0.17
MSX2P35548 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
MSX2P35548 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
MSX2P35548 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 AC009336.1-201ENST00000608941 1553 ntBASIC16.1■□□□□ 0.17
MSX2P35548 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
MSX2P35548 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.1■□□□□ 0.17
MSX2P35548 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.1■□□□□ 0.17
MSX2P35548 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.1■□□□□ 0.17
MSX2P35548 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.1■□□□□ 0.17
MSX2P35548 RNF126P1-202ENST00000569893 925 ntBASIC16.1■□□□□ 0.17
MSX2P35548 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
MSX2P35548 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.1■□□□□ 0.17
MSX2P35548 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSX2P35548 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.09■□□□□ 0.17
MSX2P35548 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.09■□□□□ 0.17
MSX2P35548 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 STK19B-204ENST00000512515 211 ntBASIC16.09■□□□□ 0.17
MSX2P35548 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
MSX2P35548 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.09■□□□□ 0.17
MSX2P35548 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.09■□□□□ 0.17
MSX2P35548 AL390719.2-201ENST00000606993 987 ntBASIC16.09■□□□□ 0.17
MSX2P35548 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms