Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SPDYE8P-202ENST00000612377 668 ntBASIC17.69■□□□□ 0.42
BDNFP23560 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
BDNFP23560 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BDNFP23560 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
BDNFP23560 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
BDNFP23560 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.68■□□□□ 0.42
BDNFP23560 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
BDNFP23560 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.68■□□□□ 0.42
BDNFP23560 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.68■□□□□ 0.42
BDNFP23560 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 MIR3909-201ENST00000579518 119 ntBASIC17.68■□□□□ 0.42
BDNFP23560 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.68■□□□□ 0.42
BDNFP23560 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 AC004835.2-201ENST00000603762 682 ntBASIC17.68■□□□□ 0.42
BDNFP23560 AC027612.4-201ENST00000605371 583 ntBASIC17.68■□□□□ 0.42
BDNFP23560 AC013467.2-201ENST00000605472 835 ntBASIC17.68■□□□□ 0.42
BDNFP23560 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
BDNFP23560 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
BDNFP23560 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
BDNFP23560 AL645728.1-201ENST00000366221 2101 ntBASIC17.68■□□□□ 0.42
BDNFP23560 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
BDNFP23560 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 AL391256.1-201ENST00000443260 1855 ntBASIC17.67■□□□□ 0.42
BDNFP23560 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.67■□□□□ 0.42
BDNFP23560 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 AC243562.1-201ENST00000560672 389 ntBASIC17.67■□□□□ 0.42
BDNFP23560 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 LINC00895-201ENST00000629028 1637 ntBASIC17.67■□□□□ 0.42
BDNFP23560 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.67■□□□□ 0.42
BDNFP23560 KRT18P28-201ENST00000453838 1332 ntBASIC17.67■□□□□ 0.42
BDNFP23560 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.67■□□□□ 0.42
BDNFP23560 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BDNFP23560 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms