Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RFX1P22670 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
RFX1P22670 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.32■□□□□ 0.52
RFX1P22670 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.32■□□□□ 0.52
RFX1P22670 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.32■□□□□ 0.52
RFX1P22670 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
RFX1P22670 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX1P22670 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX1P22670 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RFX1P22670 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 FAM8A3P-201ENST00000427218 844 ntBASIC18.31■□□□□ 0.52
RFX1P22670 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.31■□□□□ 0.52
RFX1P22670 HLA-J-202ENST00000469281 1241 ntBASIC18.31■□□□□ 0.52
RFX1P22670 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.31■□□□□ 0.52
RFX1P22670 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.31■□□□□ 0.52
RFX1P22670 MIR4469-201ENST00000583919 79 ntBASIC18.31■□□□□ 0.52
RFX1P22670 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX1P22670 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX1P22670 AL645728.1-201ENST00000366221 2101 ntBASIC18.31■□□□□ 0.52
RFX1P22670 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX1P22670 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PCDHA14-201ENST00000506751 2298 ntBASIC18.3■□□□□ 0.52
RFX1P22670 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX1P22670 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX1P22670 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX1P22670 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX1P22670 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.3■□□□□ 0.52
RFX1P22670 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX1P22670 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.3■□□□□ 0.52
RFX1P22670 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.3■□□□□ 0.52
RFX1P22670 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.3■□□□□ 0.52
RFX1P22670 AC013467.2-201ENST00000605472 835 ntBASIC18.3■□□□□ 0.52
RFX1P22670 AC106028.4-201ENST00000614509 607 ntBASIC18.3■□□□□ 0.52
RFX1P22670 AL139011.1-202ENST00000642063 584 ntBASIC18.3■□□□□ 0.52
RFX1P22670 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms