Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.53■□□□□ 0.24
VPS4BO75351 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 HLA-A-202ENST00000376806 1854 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VPS4BO75351 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
VPS4BO75351 UPF3AP3-201ENST00000420996 769 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS4BO75351 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.53■□□□□ 0.24
VPS4BO75351 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 PGAM5P1-201ENST00000518923 814 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 BNIP3P18-201ENST00000593976 575 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 AL049840.3-201ENST00000602669 611 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 AC116407.3-201ENST00000623905 1129 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 FAM215A-202ENST00000632077 792 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 AC092171.3-201ENST00000610122 2651 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 PCDHB17P-201ENST00000539533 2393 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VPS4BO75351 AL513523.2-202ENST00000427283 2040 ntBASIC16.53■□□□□ 0.24
VPS4BO75351 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS4BO75351 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS4BO75351 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS4BO75351 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS4BO75351 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.52■□□□□ 0.24
VPS4BO75351 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VPS4BO75351 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
VPS4BO75351 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS4BO75351 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 RPS8P6-201ENST00000426177 609 ntBASIC16.52■□□□□ 0.24
VPS4BO75351 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS4BO75351 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS4BO75351 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS4BO75351 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS4BO75351 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.52■□□□□ 0.24
VPS4BO75351 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 AC073592.5-201ENST00000624854 528 ntBASIC16.52■□□□□ 0.24
VPS4BO75351 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS4BO75351 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS4BO75351 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
VPS4BO75351 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS4BO75351 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS4BO75351 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
VPS4BO75351 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms