Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP1O15259 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP1O15259 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP1O15259 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.14■□□□□ 0.98
NPHP1O15259 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP1O15259 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP1O15259 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 RNU1-129P-201ENST00000384064 167 ntBASIC21.14■□□□□ 0.97
NPHP1O15259 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
NPHP1O15259 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
NPHP1O15259 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.14■□□□□ 0.97
NPHP1O15259 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.14■□□□□ 0.97
NPHP1O15259 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP1O15259 U1.21-201ENST00000580816 167 ntBASIC21.14■□□□□ 0.97
NPHP1O15259 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.14■□□□□ 0.97
NPHP1O15259 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.14■□□□□ 0.97
NPHP1O15259 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP1O15259 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NPHP1O15259 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP1O15259 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 AC241585.1-201ENST00000433527 519 ntBASIC21.13■□□□□ 0.97
NPHP1O15259 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP1O15259 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NPHP1O15259 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP1O15259 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP1O15259 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP1O15259 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 AC016027.1-202ENST00000607927 1699 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP1O15259 AL390961.4-201ENST00000623958 2535 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NPHP1O15259 AL355312.1-201ENST00000407115 2176 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NPHP1O15259 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP1O15259 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.12■□□□□ 0.97
NPHP1O15259 AC027369.6-201ENST00000525520 931 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.12■□□□□ 0.97
NPHP1O15259 AC084121.4-201ENST00000641598 221 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 AF228730.8-201ENST00000642140 221 ntBASIC21.12■□□□□ 0.97
NPHP1O15259 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 ACE-204ENST00000428043 5120 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP1O15259 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP1O15259 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP1O15259 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP1O15259 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.11■□□□□ 0.97
NPHP1O15259 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP1O15259 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.11■□□□□ 0.97
NPHP1O15259 GAPDHP21-201ENST00000450301 1010 ntBASIC21.11■□□□□ 0.97
NPHP1O15259 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC21.11■□□□□ 0.97
NPHP1O15259 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms