Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 NSUN5P1-202ENST00000421140 1535 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 NSUN5P2-203ENST00000457352 1529 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 AL645728.1-201ENST00000366221 2101 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.37□□□□□ -0.11
SDCBPO00560 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 AP000867.3-201ENST00000524675 377 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.37□□□□□ -0.11
SDCBPO00560 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.37□□□□□ -0.11
SDCBPO00560 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
SDCBPO00560 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.37□□□□□ -0.11
SDCBPO00560 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.37□□□□□ -0.11
SDCBPO00560 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 FLJ16779-201ENST00000612722 7638 ntBASIC14.37□□□□□ -0.11
SDCBPO00560 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SDCBPO00560 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SDCBPO00560 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
SDCBPO00560 AL135999.2-201ENST00000622438 1686 ntBASIC14.36□□□□□ -0.11
SDCBPO00560 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
SDCBPO00560 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SDCBPO00560 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SDCBPO00560 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SDCBPO00560 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SDCBPO00560 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.36□□□□□ -0.11
SDCBPO00560 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.36□□□□□ -0.11
SDCBPO00560 AC104819.1-201ENST00000504587 486 ntBASIC14.36□□□□□ -0.11
SDCBPO00560 STK19B-204ENST00000512515 211 ntBASIC14.36□□□□□ -0.11
SDCBPO00560 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 AL445228.2-201ENST00000605589 952 ntBASIC14.36□□□□□ -0.11
SDCBPO00560 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.36□□□□□ -0.11
SDCBPO00560 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 AC063926.3-201ENST00000624734 5658 ntBASIC14.36□□□□□ -0.11
SDCBPO00560 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDCBPO00560 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
SDCBPO00560 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
SDCBPO00560 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDCBPO00560 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDCBPO00560 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.35□□□□□ -0.11
SDCBPO00560 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDCBPO00560 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SDCBPO00560 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms