Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 AC092865.6-201ENST00000642101 219 ntBASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 LYSMD4-203ENST00000378904 2122 ntBASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 MCCD1P2-201ENST00000423228 335 ntBASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 AL513190.1-201ENST00000621254 727 ntBASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLIP3Q96DZ5 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 BCAR1-209ENST00000546196 1340 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 IGLL3P-201ENST00000412472 434 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC004967.1-201ENST00000453589 447 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC005829.1-201ENST00000570002 483 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC004877.2-201ENST00000623941 599 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC010507.1-201ENST00000633895 436 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AC133963.1-201ENST00000504166 1679 ntBASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLIP3Q96DZ5 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP3Q96DZ5 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms