Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 RN7SL818P-201ENST00000485099 259 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 RN7SL725P-201ENST00000606439 259 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 AC244452.3-201ENST00000636814 210 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 FTH1P14-201ENST00000482930 551 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 MIR4492-201ENST00000581627 80 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 EEF1DP1-201ENST00000585891 896 ntBASIC16.78■□□□□ 0.28
TTC28Q96AY4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TTC28Q96AY4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TTC28Q96AY4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TTC28Q96AY4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
TTC28Q96AY4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TTC28Q96AY4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TTC28Q96AY4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TTC28Q96AY4 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TTC28Q96AY4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TTC28Q96AY4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.77■□□□□ 0.27
TTC28Q96AY4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC016694.1-201ENST00000434179 700 ntBASIC16.76■□□□□ 0.27
TTC28Q96AY4 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC036164.1-201ENST00000570544 333 ntBASIC16.76■□□□□ 0.27
TTC28Q96AY4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC006480.2-201ENST00000609770 1337 ntBASIC16.76■□□□□ 0.27
TTC28Q96AY4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC018735.1-201ENST00000437208 1502 ntBASIC16.76■□□□□ 0.27
TTC28Q96AY4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TTC28Q96AY4 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.76■□□□□ 0.27
TTC28Q96AY4 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.76■□□□□ 0.27
TTC28Q96AY4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms