Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.65■□□□□ 0.58
HPS3Q969F9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.65■□□□□ 0.58
HPS3Q969F9 AC009947.1-201ENST00000444350 727 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HPS3Q969F9 AC079776.4-201ENST00000511039 504 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 RNA5SP415-201ENST00000517246 115 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 IGHV3-22-201ENST00000520721 359 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.65■□□□□ 0.58
HPS3Q969F9 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 GGTLC5P-201ENST00000617623 998 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HPS3Q969F9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.65■□□□□ 0.58
HPS3Q969F9 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.65■□□□□ 0.58
HPS3Q969F9 AC018695.7-201ENST00000624587 2492 ntBASIC18.65■□□□□ 0.58
HPS3Q969F9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HPS3Q969F9 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.65■□□□□ 0.58
HPS3Q969F9 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HPS3Q969F9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.64■□□□□ 0.58
HPS3Q969F9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.64■□□□□ 0.57
HPS3Q969F9 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.64■□□□□ 0.57
HPS3Q969F9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 AC108751.1-201ENST00000490852 363 ntBASIC18.64■□□□□ 0.57
HPS3Q969F9 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.64■□□□□ 0.57
HPS3Q969F9 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS3Q969F9 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS3Q969F9 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.64■□□□□ 0.57
HPS3Q969F9 AC013467.2-201ENST00000605472 835 ntBASIC18.64■□□□□ 0.57
HPS3Q969F9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.64■□□□□ 0.57
HPS3Q969F9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
HPS3Q969F9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
HPS3Q969F9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS3Q969F9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HPS3Q969F9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS3Q969F9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HPS3Q969F9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS3Q969F9 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 MRPL20P1-201ENST00000400819 433 ntBASIC18.63■□□□□ 0.57
HPS3Q969F9 FDX1P1-201ENST00000449115 551 ntBASIC18.63■□□□□ 0.57
HPS3Q969F9 AP002490.2-201ENST00000524791 560 ntBASIC18.63■□□□□ 0.57
HPS3Q969F9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.63■□□□□ 0.57
HPS3Q969F9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.63■□□□□ 0.57
HPS3Q969F9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.63■□□□□ 0.57
HPS3Q969F9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.63■□□□□ 0.57
HPS3Q969F9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HPS3Q969F9 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms