Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 AC097637.2-201ENST00000624096 1997 ntBASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 AC093214.1-201ENST00000511688 1107 ntBASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 AC068137.2-201ENST00000605408 478 ntBASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 GGTLC5P-201ENST00000617623 998 ntBASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SH3RF1Q7Z6J0 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AL353135.1-201ENST00000606729 504 ntBASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
SH3RF1Q7Z6J0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 AC063926.2-201ENST00000623766 1308 ntBASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.22■□□□□ 0.67
SH3RF1Q7Z6J0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 PCDHB17P-201ENST00000539533 2393 ntBASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms