Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
PDLIM3Q53GG5 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 AC046185.3-201ENST00000623228 1824 ntBASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 RFPL4AP1-201ENST00000530883 850 ntBASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
PDLIM3Q53GG5 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AC105020.1-201ENST00000435356 2205 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 MYCLP1-201ENST00000372451 1075 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 IGHGP-201ENST00000390555 1178 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 COX5BP2-201ENST00000392354 334 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 MED15P5-201ENST00000423150 992 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 METTL21AP1-201ENST00000438852 635 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 MTCL1P1-201ENST00000446207 792 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 DNAJB3-202ENST00000449667 1266 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 SCARNA2-201ENST00000458748 420 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AL356488.2-201ENST00000602755 427 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 IGHV3-41-201ENST00000613121 348 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 FAM197Y3-203ENST00000618346 717 ntBASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
PDLIM3Q53GG5 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms