Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AL138918.1-201ENST00000568306 659 ntBASIC17.52■□□□□ 0.4
EPHB3P54753 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 AC138649.4-201ENST00000612222 287 ntBASIC17.52■□□□□ 0.4
EPHB3P54753 MIR6080-201ENST00000617359 66 ntBASIC17.52■□□□□ 0.4
EPHB3P54753 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
EPHB3P54753 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
EPHB3P54753 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
EPHB3P54753 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.52■□□□□ 0.39
EPHB3P54753 AC008677.1-201ENST00000519230 1561 ntBASIC17.52■□□□□ 0.39
EPHB3P54753 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
EPHB3P54753 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.52■□□□□ 0.39
EPHB3P54753 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.52■□□□□ 0.39
EPHB3P54753 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
EPHB3P54753 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.51■□□□□ 0.39
EPHB3P54753 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.51■□□□□ 0.39
EPHB3P54753 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 BASP1P1-201ENST00000430708 665 ntBASIC17.51■□□□□ 0.39
EPHB3P54753 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.51■□□□□ 0.39
EPHB3P54753 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.51■□□□□ 0.39
EPHB3P54753 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 AC140878.1-201ENST00000565277 250 ntBASIC17.51■□□□□ 0.39
EPHB3P54753 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.51■□□□□ 0.39
EPHB3P54753 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.51■□□□□ 0.39
EPHB3P54753 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
EPHB3P54753 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
EPHB3P54753 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 AC092053.1-201ENST00000605787 1936 ntBASIC17.51■□□□□ 0.39
EPHB3P54753 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
EPHB3P54753 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
EPHB3P54753 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.5■□□□□ 0.39
EPHB3P54753 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.5■□□□□ 0.39
EPHB3P54753 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
EPHB3P54753 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 OR6D1P-203ENST00000641209 4860 ntBASIC17.5■□□□□ 0.39
EPHB3P54753 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
EPHB3P54753 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.5■□□□□ 0.39
EPHB3P54753 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.5■□□□□ 0.39
EPHB3P54753 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
EPHB3P54753 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.5■□□□□ 0.39
EPHB3P54753 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.5■□□□□ 0.39
EPHB3P54753 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 AC105233.2-201ENST00000523697 349 ntBASIC17.5■□□□□ 0.39
EPHB3P54753 AF228730.5-201ENST00000530288 346 ntBASIC17.5■□□□□ 0.39
EPHB3P54753 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.5■□□□□ 0.39
EPHB3P54753 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.5■□□□□ 0.39
EPHB3P54753 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.5■□□□□ 0.39
EPHB3P54753 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.5■□□□□ 0.39
EPHB3P54753 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.5■□□□□ 0.39
EPHB3P54753 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.5■□□□□ 0.39
EPHB3P54753 AL390955.2-201ENST00000603032 514 ntBASIC17.5■□□□□ 0.39
EPHB3P54753 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
EPHB3P54753 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
EPHB3P54753 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms