Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.16□□□□□ -0.14
ABCA1O95477 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.15□□□□□ -0.14
ABCA1O95477 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 AC008677.1-201ENST00000519230 1561 ntBASIC14.15□□□□□ -0.14
ABCA1O95477 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.15□□□□□ -0.14
ABCA1O95477 AC002056.1-201ENST00000395613 760 ntBASIC14.15□□□□□ -0.14
ABCA1O95477 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 LINC00982-205ENST00000420957 435 ntBASIC14.15□□□□□ -0.14
ABCA1O95477 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.15□□□□□ -0.14
ABCA1O95477 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.15□□□□□ -0.14
ABCA1O95477 DUX4L17-201ENST00000557360 1267 ntBASIC14.15□□□□□ -0.14
ABCA1O95477 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ABCA1O95477 LINC02560-201ENST00000596379 459 ntBASIC14.15□□□□□ -0.14
ABCA1O95477 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.14□□□□□ -0.15
ABCA1O95477 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ABCA1O95477 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.14□□□□□ -0.15
ABCA1O95477 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ABCA1O95477 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
ABCA1O95477 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
ABCA1O95477 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms