Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC28A1O00337 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC28A1O00337 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 AC079328.2-201ENST00000561241 3354 ntBASIC16.24■□□□□ 0.19
SLC28A1O00337 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.24■□□□□ 0.19
SLC28A1O00337 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 MTDHP3-201ENST00000594186 672 ntBASIC16.24■□□□□ 0.19
SLC28A1O00337 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SLC28A1O00337 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.24■□□□□ 0.19
SLC28A1O00337 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 ME2P1-201ENST00000426028 1970 ntBASIC16.24■□□□□ 0.19
SLC28A1O00337 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC28A1O00337 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC28A1O00337 AL139384.1-201ENST00000612143 3047 ntBASIC16.24■□□□□ 0.19
SLC28A1O00337 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SLC28A1O00337 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 AL662844.4-201ENST00000606367 2838 ntBASIC16.23■□□□□ 0.19
SLC28A1O00337 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 PCDH8P1-201ENST00000428983 2773 ntBASIC16.23■□□□□ 0.19
SLC28A1O00337 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SLC28A1O00337 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.23■□□□□ 0.19
SLC28A1O00337 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 AC139887.3-201ENST00000568585 713 ntBASIC16.23■□□□□ 0.19
SLC28A1O00337 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.23■□□□□ 0.19
SLC28A1O00337 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 AL732292.2-201ENST00000609649 430 ntBASIC16.23■□□□□ 0.19
SLC28A1O00337 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SLC28A1O00337 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC28A1O00337 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SLC28A1O00337 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC28A1O00337 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.22■□□□□ 0.19
SLC28A1O00337 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.22■□□□□ 0.19
SLC28A1O00337 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms