Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 LTB4R2-202ENST00000528054 3092 ntBASIC16.93■□□□□ 0.3
LHX3Q9UBR4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.93■□□□□ 0.3
LHX3Q9UBR4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AL355306.1-201ENST00000415580 579 ntBASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AL512652.2-201ENST00000625156 1716 ntBASIC16.92■□□□□ 0.3
LHX3Q9UBR4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LHX3Q9UBR4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 CEND1P1-201ENST00000451006 455 ntBASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 AC021097.1-201ENST00000607902 574 ntBASIC16.91■□□□□ 0.3
LHX3Q9UBR4 AC006538.3-201ENST00000612495 578 ntBASIC16.91■□□□□ 0.3
LHX3Q9UBR4 AC139530.3-201ENST00000620344 690 ntBASIC16.91■□□□□ 0.3
LHX3Q9UBR4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LHX3Q9UBR4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms