Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 TREML5P-201ENST00000421694 576 ntBASIC17.28■□□□□ 0.36
TDP1Q9NUW8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.28■□□□□ 0.36
TDP1Q9NUW8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC067852.2-201ENST00000590513 2313 ntBASIC17.27■□□□□ 0.36
TDP1Q9NUW8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC105233.2-201ENST00000523697 349 ntBASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC069120.2-201ENST00000524091 540 ntBASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AF228730.5-201ENST00000530288 346 ntBASIC17.27■□□□□ 0.36
TDP1Q9NUW8 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC138761.1-201ENST00000584393 385 ntBASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.27■□□□□ 0.36
TDP1Q9NUW8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 AC092053.1-201ENST00000605787 1936 ntBASIC17.27■□□□□ 0.35
TDP1Q9NUW8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TDP1Q9NUW8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.26■□□□□ 0.35
TDP1Q9NUW8 COX20P2-201ENST00000452636 358 ntBASIC17.26■□□□□ 0.35
TDP1Q9NUW8 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 IGHV3-42-201ENST00000520410 361 ntBASIC17.26■□□□□ 0.35
TDP1Q9NUW8 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 AL158211.3-201ENST00000607385 239 ntBASIC17.26■□□□□ 0.35
TDP1Q9NUW8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TDP1Q9NUW8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms