Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 IGHGP-201ENST00000390555 1178 ntBASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 MRPL3P1-201ENST00000400109 1033 ntBASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 AL592071.1-201ENST00000611956 408 ntBASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.11■□□□□ 0.33
TRIM55Q9BYV6 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AL513477.1-201ENST00000602865 2407 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 IGHV3-47-201ENST00000425060 335 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC106795.1-205ENST00000512851 1056 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 Z69720.1-201ENST00000601483 472 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AL121912.1-201ENST00000603683 238 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AL353801.3-201ENST00000609898 542 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC124864.1-201ENST00000623408 392 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 LINC00554-201ENST00000564841 3011 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC103702.1-201ENST00000548801 2630 ntBASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM55Q9BYV6 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 AC002558.1-201ENST00000488906 803 ntBASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM55Q9BYV6 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms