Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.88■□□□□ 0.29
CPNE1Q99829 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.88■□□□□ 0.29
CPNE1Q99829 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CPNE1Q99829 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CPNE1Q99829 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CPNE1Q99829 TOP3BP1-201ENST00000420768 1380 ntBASIC16.88■□□□□ 0.29
CPNE1Q99829 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CPNE1Q99829 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CPNE1Q99829 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CPNE1Q99829 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CPNE1Q99829 PCDHA1-201ENST00000378133 2726 ntBASIC16.87■□□□□ 0.29
CPNE1Q99829 LINC02199-201ENST00000506655 2702 ntBASIC16.87■□□□□ 0.29
CPNE1Q99829 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.87■□□□□ 0.29
CPNE1Q99829 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 AL139424.1-201ENST00000607572 797 ntBASIC16.87■□□□□ 0.29
CPNE1Q99829 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.87■□□□□ 0.29
CPNE1Q99829 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CPNE1Q99829 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.87■□□□□ 0.29
CPNE1Q99829 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.87■□□□□ 0.29
CPNE1Q99829 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CPNE1Q99829 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.86■□□□□ 0.29
CPNE1Q99829 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CPNE1Q99829 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.86■□□□□ 0.29
CPNE1Q99829 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 RBM17P3-201ENST00000417687 1192 ntBASIC16.86■□□□□ 0.29
CPNE1Q99829 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.86■□□□□ 0.29
CPNE1Q99829 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.86■□□□□ 0.29
CPNE1Q99829 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.86■□□□□ 0.29
CPNE1Q99829 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.86■□□□□ 0.29
CPNE1Q99829 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.86■□□□□ 0.29
CPNE1Q99829 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.86■□□□□ 0.29
CPNE1Q99829 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CPNE1Q99829 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms