Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 HCG4P8-203ENST00000443049 980 ntBASIC15.19■□□□□ 0.02
PTP4A1Q93096 AC096582.2-201ENST00000510860 516 ntBASIC15.19■□□□□ 0.02
PTP4A1Q93096 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.19■□□□□ 0.02
PTP4A1Q93096 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTP4A1Q93096 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 SIGLEC16-201ENST00000599858 1437 ntBASIC15.18■□□□□ 0.02
PTP4A1Q93096 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 LINC00982-205ENST00000420957 435 ntBASIC15.18■□□□□ 0.02
PTP4A1Q93096 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 HLA-J-202ENST00000469281 1241 ntBASIC15.18■□□□□ 0.02
PTP4A1Q93096 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 MIR3652-201ENST00000579335 131 ntBASIC15.18■□□□□ 0.02
PTP4A1Q93096 AC099336.1-202ENST00000602961 463 ntBASIC15.18■□□□□ 0.02
PTP4A1Q93096 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.18■□□□□ 0.02
PTP4A1Q93096 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTP4A1Q93096 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.17■□□□□ 0.02
PTP4A1Q93096 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTP4A1Q93096 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PTP4A1Q93096 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTP4A1Q93096 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.17■□□□□ 0.02
PTP4A1Q93096 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms