Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC88AQ3V6T2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 AC007541.1-201ENST00000570282 1469 ntBASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 AC098850.1-201ENST00000419919 790 ntBASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 RNA5SP410-201ENST00000516285 106 ntBASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC88AQ3V6T2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 AL079307.3-201ENST00000556114 283 ntBASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 AC007613.1-201ENST00000572811 2597 ntBASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CCDC88AQ3V6T2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 AC055876.2-201ENST00000531834 546 ntBASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 MIR6775-201ENST00000617557 69 ntBASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 AL109936.8-201ENST00000641772 604 ntBASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 AC067852.2-201ENST00000590513 2313 ntBASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC88AQ3V6T2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 AC091167.2-201ENST00000579581 588 ntBASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 COX11-210ENST00000639671 696 ntBASIC20.33■□□□□ 0.84
CCDC88AQ3V6T2 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC88AQ3V6T2 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms