Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
FOXA3P55318 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 GAD2-202ENST00000376248 680 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.72□□□□□ -0.37
FOXA3P55318 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC12.72□□□□□ -0.37
FOXA3P55318 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC12.72□□□□□ -0.37
FOXA3P55318 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
FOXA3P55318 SBF1P1-201ENST00000444527 5631 ntBASIC12.72□□□□□ -0.37
FOXA3P55318 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.72□□□□□ -0.37
FOXA3P55318 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
FOXA3P55318 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC12.71□□□□□ -0.37
FOXA3P55318 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.37
FOXA3P55318 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 ALOX12P2-203ENST00000570921 1945 ntBASIC12.71□□□□□ -0.37
FOXA3P55318 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC12.71□□□□□ -0.37
FOXA3P55318 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA3P55318 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA3P55318 KRT18P6-201ENST00000555540 1265 ntBASIC12.71□□□□□ -0.37
FOXA3P55318 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA3P55318 NEK4P2-201ENST00000580004 1012 ntBASIC12.71□□□□□ -0.37
FOXA3P55318 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC12.71□□□□□ -0.37
FOXA3P55318 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
FOXA3P55318 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.71□□□□□ -0.37
FOXA3P55318 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.71□□□□□ -0.37
FOXA3P55318 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA3P55318 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.71□□□□□ -0.38
FOXA3P55318 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.71□□□□□ -0.38
FOXA3P55318 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC12.71□□□□□ -0.38
FOXA3P55318 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA3P55318 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA3P55318 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
FOXA3P55318 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.38
FOXA3P55318 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA3P55318 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms