Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SAPCD2P3-201ENST00000455031 850 ntBASIC13.85□□□□□ -0.19
CDX1P47902 EMBP1-201ENST00000458200 901 ntBASIC13.85□□□□□ -0.19
CDX1P47902 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 AC011467.2-201ENST00000598425 242 ntBASIC13.85□□□□□ -0.19
CDX1P47902 REXO1L6P-202ENST00000619970 1078 ntBASIC13.85□□□□□ -0.19
CDX1P47902 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CDX1P47902 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CDX1P47902 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CDX1P47902 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 CYP2T1P-202ENST00000641596 2535 ntBASIC13.85□□□□□ -0.19
CDX1P47902 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CDX1P47902 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 AL096828.2-201ENST00000567259 1965 ntBASIC13.84□□□□□ -0.19
CDX1P47902 AC092384.3-202ENST00000564646 2873 ntBASIC13.84□□□□□ -0.19
CDX1P47902 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.84□□□□□ -0.19
CDX1P47902 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.84□□□□□ -0.19
CDX1P47902 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 RCN1P2-201ENST00000398357 915 ntBASIC13.84□□□□□ -0.19
CDX1P47902 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.84□□□□□ -0.19
CDX1P47902 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.84□□□□□ -0.19
CDX1P47902 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
CDX1P47902 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CDX1P47902 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CDX1P47902 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CDX1P47902 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CDX1P47902 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
CDX1P47902 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CDX1P47902 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
CDX1P47902 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.83□□□□□ -0.19
CDX1P47902 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms