Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AP001269.4-201ENST00000609611 512 ntBASIC19.47■□□□□ 0.71
LIG1P18858 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.47■□□□□ 0.71
LIG1P18858 REXO1L6P-202ENST00000619970 1078 ntBASIC19.47■□□□□ 0.71
LIG1P18858 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.47■□□□□ 0.71
LIG1P18858 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.47■□□□□ 0.71
LIG1P18858 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIG1P18858 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG1P18858 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
LIG1P18858 AC026396.1-201ENST00000419388 421 ntBASIC19.46■□□□□ 0.71
LIG1P18858 DUX4L17-201ENST00000557360 1267 ntBASIC19.46■□□□□ 0.71
LIG1P18858 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.46■□□□□ 0.71
LIG1P18858 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.46■□□□□ 0.71
LIG1P18858 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.46■□□□□ 0.71
LIG1P18858 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIG1P18858 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
LIG1P18858 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 AC003669.1-201ENST00000334569 611 ntBASIC19.45■□□□□ 0.7
LIG1P18858 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 KLF4P1-201ENST00000412782 1185 ntBASIC19.45■□□□□ 0.7
LIG1P18858 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 AC008608.2-201ENST00000606089 416 ntBASIC19.45■□□□□ 0.7
LIG1P18858 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 AL513523.2-202ENST00000427283 2040 ntBASIC19.45■□□□□ 0.7
LIG1P18858 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.45■□□□□ 0.7
LIG1P18858 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIG1P18858 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.45■□□□□ 0.7
LIG1P18858 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 FAAHP1-202ENST00000446499 1238 ntBASIC19.44■□□□□ 0.7
LIG1P18858 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms