Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 TSPY22P-201ENST00000427496 604 ntBASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 AC011840.4-201ENST00000578471 627 ntBASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 IGHV3-41-201ENST00000613121 348 ntBASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 AC133561.5-201ENST00000635547 218 ntBASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
TRAV5A0A0B4J249 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 AC073508.3-201ENST00000619697 1419 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 KRT18P57-201ENST00000443599 1254 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 AC093827.2-201ENST00000512654 315 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 AL353801.3-201ENST00000609898 542 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 AC066615.1-201ENST00000640911 628 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 AL365203.3-201ENST00000609742 2057 ntBASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
TRAV5A0A0B4J249 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.15□□□□□ -0.3
TRAV5A0A0B4J249 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms