Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMCH1Q9UPQ0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIMCH1Q9UPQ0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
LIMCH1Q9UPQ0 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 HCG4P8-203ENST00000443049 980 ntBASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 SNX33P1-201ENST00000592116 1762 ntBASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMCH1Q9UPQ0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 LINC02199-201ENST00000506655 2702 ntBASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 AC008608.2-201ENST00000606089 416 ntBASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 AL513523.2-202ENST00000427283 2040 ntBASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMCH1Q9UPQ0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 AC005052.1-201ENST00000625181 2492 ntBASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 PTCHD3P3-201ENST00000403073 906 ntBASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 AC091304.2-201ENST00000564639 760 ntBASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMCH1Q9UPQ0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms