Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13AQ96RL7 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS13AQ96RL7 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS13AQ96RL7 CALR4P-201ENST00000431943 946 ntBASIC16.46■□□□□ 0.22
VPS13AQ96RL7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.46■□□□□ 0.22
VPS13AQ96RL7 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.46■□□□□ 0.22
VPS13AQ96RL7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 FAM220BP-201ENST00000377689 816 ntBASIC16.45■□□□□ 0.22
VPS13AQ96RL7 RPL7P3-201ENST00000441388 714 ntBASIC16.45■□□□□ 0.22
VPS13AQ96RL7 AC006538.1-201ENST00000567905 1585 ntBASIC16.45■□□□□ 0.22
VPS13AQ96RL7 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 AL035456.1-201ENST00000456064 1369 ntBASIC16.45■□□□□ 0.22
VPS13AQ96RL7 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 MIR4722-201ENST00000578292 60 ntBASIC16.45■□□□□ 0.22
VPS13AQ96RL7 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13AQ96RL7 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 CTBP2P5-201ENST00000454986 1264 ntBASIC16.44■□□□□ 0.22
VPS13AQ96RL7 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 AC105129.2-201ENST00000559536 390 ntBASIC16.44■□□□□ 0.22
VPS13AQ96RL7 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.44■□□□□ 0.22
VPS13AQ96RL7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 NOC2LP1-202ENST00000452600 2235 ntBASIC16.44■□□□□ 0.22
VPS13AQ96RL7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13AQ96RL7 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 HLA-H-201ENST00000383620 1096 ntBASIC16.43■□□□□ 0.22
VPS13AQ96RL7 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 KRT8P13-201ENST00000463294 1010 ntBASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms