Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 NSUN5P1-202ENST00000421140 1535 ntBASIC15.22■□□□□ 0.03
PTP4A1Q93096 NSUN5P2-203ENST00000457352 1529 ntBASIC15.22■□□□□ 0.03
PTP4A1Q93096 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.22■□□□□ 0.03
PTP4A1Q93096 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 AC097637.2-201ENST00000624096 1997 ntBASIC15.22■□□□□ 0.03
PTP4A1Q93096 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTP4A1Q93096 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
PTP4A1Q93096 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 LINC00895-201ENST00000629028 1637 ntBASIC15.21■□□□□ 0.03
PTP4A1Q93096 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 AP002414.1-201ENST00000391405 1147 ntBASIC15.21■□□□□ 0.03
PTP4A1Q93096 SPDYE21P-201ENST00000413323 827 ntBASIC15.21■□□□□ 0.03
PTP4A1Q93096 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 ME2P1-201ENST00000426028 1970 ntBASIC15.21■□□□□ 0.03
PTP4A1Q93096 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.21■□□□□ 0.03
PTP4A1Q93096 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTP4A1Q93096 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTP4A1Q93096 AC007950.2-201ENST00000615045 2347 ntBASIC15.21■□□□□ 0.02
PTP4A1Q93096 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTP4A1Q93096 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTP4A1Q93096 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PTP4A1Q93096 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTP4A1Q93096 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 AC006538.1-201ENST00000567905 1585 ntBASIC15.2■□□□□ 0.02
PTP4A1Q93096 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTP4A1Q93096 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.2■□□□□ 0.02
PTP4A1Q93096 AL021920.2-201ENST00000624828 1351 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms