Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 AC023141.13-201ENST00000604991 943 ntBASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SH3RF1Q7Z6J0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC015922.1-201ENST00000421102 1152 ntBASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC005034.1-201ENST00000426657 489 ntBASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC023141.5-201ENST00000458585 616 ntBASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC190387.1-201ENST00000551683 408 ntBASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 AC007064.4-201ENST00000637740 555 ntBASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.29■□□□□ 0.68
SH3RF1Q7Z6J0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 DUX4L27-201ENST00000554796 1261 ntBASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.28■□□□□ 0.68
SH3RF1Q7Z6J0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms