Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 AC106886.4-201ENST00000623557 2502 ntBASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 CYMP-203ENST00000474680 1263 ntBASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 Z69720.1-201ENST00000601483 472 ntBASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC018695.7-201ENST00000624587 2492 ntBASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC060834.1-201ENST00000443027 2032 ntBASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM3Q53GG5 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 HLA-F-220ENST00000434407 884 ntBASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 DNAJB3-201ENST00000446806 729 ntBASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 AL136038.4-201ENST00000603606 1261 ntBASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 AC134684.3-201ENST00000641758 218 ntBASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 AC097374.2-201ENST00000618617 1306 ntBASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PDLIM3Q53GG5 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.06□□□□□ -0.16
PDLIM3Q53GG5 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms