Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 PCDHA1-201ENST00000378133 2726 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN6P29350 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 FGFR3P6-201ENST00000457012 610 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 AP002469.2-201ENST00000531724 424 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.05■□□□□ 0.16
PTPN6P29350 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.05■□□□□ 0.16
PTPN6P29350 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.05■□□□□ 0.16
PTPN6P29350 MTDHP3-201ENST00000594186 672 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN6P29350 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN6P29350 AL513523.2-202ENST00000427283 2040 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTPN6P29350 AC079328.2-201ENST00000561241 3354 ntBASIC16.05■□□□□ 0.16
PTPN6P29350 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN6P29350 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN6P29350 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN6P29350 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 AC097637.2-201ENST00000624096 1997 ntBASIC16.04■□□□□ 0.16
PTPN6P29350 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN6P29350 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.04■□□□□ 0.16
PTPN6P29350 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN6P29350 TP73-AS1-207ENST00000624167 988 ntBASIC16.04■□□□□ 0.16
PTPN6P29350 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PTPN6P29350 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN6P29350 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN6P29350 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN6P29350 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN6P29350 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.03■□□□□ 0.16
PTPN6P29350 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTPN6P29350 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN6P29350 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN6P29350 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms