Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
HMGB1P09429 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGB1P09429 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
HMGB1P09429 AC117500.6-201ENST00000624871 588 ntBASIC19.92■□□□□ 0.78
HMGB1P09429 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
HMGB1P09429 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
HMGB1P09429 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HMGB1P09429 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HMGB1P09429 AC124067.4-201ENST00000519691 2379 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.91■□□□□ 0.78
HMGB1P09429 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HMGB1P09429 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 HCG4-201ENST00000418983 998 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 PRSS29P-201ENST00000440800 595 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 AC108073.2-201ENST00000464002 357 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 AC092910.1-201ENST00000482027 1129 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.91■□□□□ 0.78
HMGB1P09429 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 MIR7706-201ENST00000613747 67 ntBASIC19.91■□□□□ 0.78
HMGB1P09429 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.91■□□□□ 0.78
HMGB1P09429 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
HMGB1P09429 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
HMGB1P09429 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGB1P09429 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HMGB1P09429 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGB1P09429 AC092171.3-201ENST00000610122 2651 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGB1P09429 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 MRPL3P1-201ENST00000400109 1033 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 RNA5SP419-201ENST00000515908 135 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.9■□□□□ 0.78
HMGB1P09429 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 AP001005.1-201ENST00000571755 1248 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HMGB1P09429 AC010654.1-201ENST00000615722 808 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGB1P09429 AP001350.2-201ENST00000625104 1094 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 SLC22A20-204ENST00000530038 1673 ntBASIC19.9■□□□□ 0.78
HMGB1P09429 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGB1P09429 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HMGB1P09429 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
HMGB1P09429 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
HMGB1P09429 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HMGB1P09429 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
HMGB1P09429 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
HMGB1P09429 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGB1P09429 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 KRT8P39-201ENST00000396270 1433 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 PMS2P1-201ENST00000431037 1228 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGB1P09429 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms