Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SHOX2O60902 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.93■□□□□ 0.3
SHOX2O60902 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 PRAL-201ENST00000624952 3286 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.93■□□□□ 0.3
SHOX2O60902 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 AC069224.1-201ENST00000566372 1715 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 TMBIM7P-203ENST00000641617 1718 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 AC020658.6-201ENST00000623564 1870 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.92■□□□□ 0.3
SHOX2O60902 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.92■□□□□ 0.3
SHOX2O60902 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SHOX2O60902 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.92■□□□□ 0.3
SHOX2O60902 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.92■□□□□ 0.3
SHOX2O60902 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.92■□□□□ 0.3
SHOX2O60902 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.92■□□□□ 0.3
SHOX2O60902 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.92■□□□□ 0.3
SHOX2O60902 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.92■□□□□ 0.3
SHOX2O60902 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.92■□□□□ 0.3
SHOX2O60902 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SHOX2O60902 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 AC010460.3-201ENST00000511359 1579 ntBASIC16.92■□□□□ 0.3
SHOX2O60902 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SHOX2O60902 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SHOX2O60902 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHOX2O60902 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.91■□□□□ 0.3
SHOX2O60902 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 AC116562.2-201ENST00000507042 360 ntBASIC16.91■□□□□ 0.3
SHOX2O60902 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.91■□□□□ 0.3
SHOX2O60902 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.91■□□□□ 0.3
SHOX2O60902 AL353719.1-201ENST00000566847 864 ntBASIC16.91■□□□□ 0.3
SHOX2O60902 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.91■□□□□ 0.3
SHOX2O60902 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 AC097637.2-201ENST00000624096 1997 ntBASIC16.91■□□□□ 0.3
SHOX2O60902 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SHOX2O60902 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHOX2O60902 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms