Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 NKAPP1-205ENST00000585790 367 ntBASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 AC007950.2-201ENST00000615045 2347 ntBASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCDHA3Q9Y5H8 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHA3Q9Y5H8 TOP3BP1-201ENST00000420768 1380 ntBASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 MTHFR-217ENST00000641820 1569 ntBASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 AL589182.2-201ENST00000619332 1049 ntBASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHA3Q9Y5H8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 AC022188.1-201ENST00000620960 1664 ntBASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 AC008741.2-201ENST00000612792 3115 ntBASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 RBM17P3-201ENST00000417687 1192 ntBASIC17.65■□□□□ 0.42
PCDHA3Q9Y5H8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms