Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AL390955.2-201ENST00000603032 514 ntBASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
SH3RF1Q7Z6J0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 AC093520.2-201ENST00000561830 333 ntBASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 AC025678.2-201ENST00000562061 970 ntBASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SH3RF1Q7Z6J0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 LINC00628-201ENST00000628516 1289 ntBASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AF228730.6-201ENST00000641497 218 ntBASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AC084121.3-201ENST00000641716 218 ntBASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 AC105233.6-201ENST00000642093 218 ntBASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SH3RF1Q7Z6J0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 SIGLEC30P-201ENST00000455569 941 ntBASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 AC022145.2-201ENST00000598203 171 ntBASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 AL035252.4-201ENST00000624174 288 ntBASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.31■□□□□ 0.68
SH3RF1Q7Z6J0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms