Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
KRT39Q6A163 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
KRT39Q6A163 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
KRT39Q6A163 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 PRSS29P-201ENST00000440800 595 ntBASIC18.26■□□□□ 0.51
KRT39Q6A163 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.26■□□□□ 0.51
KRT39Q6A163 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.26■□□□□ 0.51
KRT39Q6A163 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.26■□□□□ 0.51
KRT39Q6A163 AC091167.2-201ENST00000579581 588 ntBASIC18.26■□□□□ 0.51
KRT39Q6A163 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 AC010654.1-201ENST00000615722 808 ntBASIC18.26■□□□□ 0.51
KRT39Q6A163 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.26■□□□□ 0.51
KRT39Q6A163 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.26■□□□□ 0.51
KRT39Q6A163 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
KRT39Q6A163 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.25■□□□□ 0.51
KRT39Q6A163 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.25■□□□□ 0.51
KRT39Q6A163 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
KRT39Q6A163 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 AC009947.1-201ENST00000444350 727 ntBASIC18.25■□□□□ 0.51
KRT39Q6A163 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 RNA5SP415-201ENST00000517246 115 ntBASIC18.25■□□□□ 0.51
KRT39Q6A163 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.25■□□□□ 0.51
KRT39Q6A163 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.25■□□□□ 0.51
KRT39Q6A163 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.25■□□□□ 0.51
KRT39Q6A163 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 AL353732.1-201ENST00000569618 1459 ntBASIC18.25■□□□□ 0.51
KRT39Q6A163 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
KRT39Q6A163 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
KRT39Q6A163 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.24■□□□□ 0.51
KRT39Q6A163 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.24■□□□□ 0.51
KRT39Q6A163 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
KRT39Q6A163 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
KRT39Q6A163 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.24■□□□□ 0.51
KRT39Q6A163 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.24■□□□□ 0.51
KRT39Q6A163 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms