Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX2-1P43699 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX2-1P43699 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX2-1P43699 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NKX2-1P43699 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NKX2-1P43699 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NKX2-1P43699 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NKX2-1P43699 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX2-1P43699 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.91□□□□□ -0.18
NKX2-1P43699 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NKX2-1P43699 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX2-1P43699 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX2-1P43699 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NKX2-1P43699 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 AL356309.3-201ENST00000624132 1934 ntBASIC13.9□□□□□ -0.18
NKX2-1P43699 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 AC093827.2-201ENST00000512654 315 ntBASIC13.9□□□□□ -0.18
NKX2-1P43699 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 CD81-212ENST00000526072 1172 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.9□□□□□ -0.18
NKX2-1P43699 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 AC111152.3-201ENST00000569699 673 ntBASIC13.9□□□□□ -0.18
NKX2-1P43699 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
NKX2-1P43699 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NKX2-1P43699 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX2-1P43699 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX2-1P43699 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC13.9□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms