Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 AC105917.1-201ENST00000506637 2539 ntBASIC18.71■□□□□ 0.59
TPM1P09493 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 AC009336.1-201ENST00000608941 1553 ntBASIC18.71■□□□□ 0.59
TPM1P09493 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TPM1P09493 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TPM1P09493 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.71■□□□□ 0.59
TPM1P09493 LINC00554-201ENST00000564841 3011 ntBASIC18.71■□□□□ 0.59
TPM1P09493 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
TPM1P09493 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
TPM1P09493 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
TPM1P09493 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
TPM1P09493 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TPM1P09493 TSPY26P-202ENST00000565928 3884 ntBASIC18.7■□□□□ 0.58
TPM1P09493 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TPM1P09493 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.7■□□□□ 0.58
TPM1P09493 AC113347.1-201ENST00000413321 391 ntBASIC18.7■□□□□ 0.58
TPM1P09493 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.7■□□□□ 0.58
TPM1P09493 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 AC005363.2-201ENST00000618631 242 ntBASIC18.7■□□□□ 0.58
TPM1P09493 AC007326.2-201ENST00000624224 7579 ntBASIC18.7■□□□□ 0.58
TPM1P09493 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TPM1P09493 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TPM1P09493 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.69■□□□□ 0.58
TPM1P09493 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM1P09493 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TPM1P09493 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 AC003669.1-201ENST00000334569 611 ntBASIC18.69■□□□□ 0.58
TPM1P09493 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 RNF152P1-201ENST00000397754 604 ntBASIC18.69■□□□□ 0.58
TPM1P09493 TSPY5P-201ENST00000426936 936 ntBASIC18.69■□□□□ 0.58
TPM1P09493 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TPM1P09493 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TPM1P09493 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.69■□□□□ 0.58
TPM1P09493 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.69■□□□□ 0.58
TPM1P09493 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TPM1P09493 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM1P09493 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 AL662844.4-201ENST00000606367 2838 ntBASIC18.69■□□□□ 0.58
TPM1P09493 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TPM1P09493 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TPM1P09493 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.69■□□□□ 0.58
TPM1P09493 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 HLA-A-202ENST00000376806 1854 ntBASIC18.69■□□□□ 0.58
TPM1P09493 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TPM1P09493 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TPM1P09493 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.68■□□□□ 0.58
TPM1P09493 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.68■□□□□ 0.58
TPM1P09493 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms