Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 AL008721.1-201ENST00000609964 604 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 AL590560.3-201ENST00000623350 461 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 AP001350.2-201ENST00000625104 1094 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 AL390961.4-201ENST00000623958 2535 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 PCDHB18P-201ENST00000524813 2368 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AC100757.3-201ENST00000622361 1406 ntBASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 MRPS18AP1-201ENST00000414458 589 ntBASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AC027369.6-201ENST00000525520 931 ntBASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 MIR6752-201ENST00000618442 71 ntBASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDHGA1Q9Y5H4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDHGA1Q9Y5H4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 COX5BP8-201ENST00000416911 349 ntBASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 RN7SL692P-201ENST00000464677 288 ntBASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDHGA1Q9Y5H4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDHGA1Q9Y5H4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms