Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 PMPCAP1-201ENST00000508114 1576 ntBASIC14.9□□□□□ -0.02
RHBDD3Q9Y3P4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
RHBDD3Q9Y3P4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 AC138894.3-201ENST00000603787 634 ntBASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 EGFEM1P-202ENST00000431685 1563 ntBASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
RHBDD3Q9Y3P4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 AP000867.4-201ENST00000641616 219 ntBASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 AC006449.5-201ENST00000610658 2098 ntBASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.88□□□□□ -0.03
RHBDD3Q9Y3P4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AL591684.3-201ENST00000605187 298 ntBASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
RHBDD3Q9Y3P4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms