Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 AL355877.3-201ENST00000622820 899 ntBASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 AL139011.1-202ENST00000642063 584 ntBASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMCH1Q9UPQ0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 MIR3652-201ENST00000579335 131 ntBASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMCH1Q9UPQ0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 UPK3BP1-201ENST00000428678 509 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 PAWRP1-201ENST00000451083 565 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 KRT18P31-201ENST00000506277 1292 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 TOP3BP1-201ENST00000420768 1380 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMCH1Q9UPQ0 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms