Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC117947.1-201ENST00000427448 529 ntBASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC112907.2-201ENST00000448639 330 ntBASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 Z83836.1-201ENST00000624605 1642 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 AC005915.1-201ENST00000624912 2018 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 HBZP1-201ENST00000354915 429 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RNF152P1-201ENST00000397754 604 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TSPY5P-201ENST00000426936 936 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 VENTXP5-201ENST00000523979 775 ntBASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CHMP1AQ9HD42 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CHMP1AQ9HD42 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms