Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28BQ9BUN5 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 LINC00895-201ENST00000629028 1637 ntBASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 DUX4L17-201ENST00000557360 1267 ntBASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 AC005336.2-201ENST00000593183 939 ntBASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 HYMAI.1-201ENST00000620949 238 ntBASIC16.52■□□□□ 0.24
CCDC28BQ9BUN5 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 TSPY26P-202ENST00000565928 3884 ntBASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CCDC28BQ9BUN5 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 KRT18P38-201ENST00000449496 1282 ntBASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 HOMER2P1-201ENST00000455653 964 ntBASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 AC132938.5-201ENST00000624980 1813 ntBASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28BQ9BUN5 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28BQ9BUN5 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms