Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 MIR3652-201ENST00000579335 131 ntBASIC19.37■□□□□ 0.69
USP28Q96RU2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
USP28Q96RU2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 PKD1P1-201ENST00000458669 6805 ntBASIC19.37■□□□□ 0.69
USP28Q96RU2 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.37■□□□□ 0.69
USP28Q96RU2 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.36■□□□□ 0.69
USP28Q96RU2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 HCG4P8-203ENST00000443049 980 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 PAWRP1-201ENST00000451083 565 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 HLA-J-202ENST00000469281 1241 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
USP28Q96RU2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.36■□□□□ 0.69
USP28Q96RU2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.36■□□□□ 0.69
USP28Q96RU2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 AC013467.2-201ENST00000605472 835 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.36■□□□□ 0.69
USP28Q96RU2 AL589182.2-201ENST00000619332 1049 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 SNX33P1-201ENST00000592116 1762 ntBASIC19.36■□□□□ 0.69
USP28Q96RU2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.36■□□□□ 0.69
USP28Q96RU2 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP28Q96RU2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
USP28Q96RU2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.35■□□□□ 0.69
USP28Q96RU2 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.35■□□□□ 0.69
USP28Q96RU2 PCDHA1-201ENST00000378133 2726 ntBASIC19.35■□□□□ 0.69
USP28Q96RU2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
USP28Q96RU2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 TSPY19P-201ENST00000418461 509 ntBASIC19.35■□□□□ 0.69
USP28Q96RU2 TSPY18P-201ENST00000441642 509 ntBASIC19.35■□□□□ 0.69
USP28Q96RU2 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.35■□□□□ 0.69
USP28Q96RU2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
USP28Q96RU2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP28Q96RU2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
USP28Q96RU2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
USP28Q96RU2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP28Q96RU2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
USP28Q96RU2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.35■□□□□ 0.69
USP28Q96RU2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
USP28Q96RU2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 ME2P1-201ENST00000426028 1970 ntBASIC19.34■□□□□ 0.69
USP28Q96RU2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
USP28Q96RU2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.34■□□□□ 0.69
USP28Q96RU2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 AKR1C7P-201ENST00000305623 895 ntBASIC19.34■□□□□ 0.69
USP28Q96RU2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms