Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 AC073439.1-201ENST00000624121 1774 ntBASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 RN7SL618P-201ENST00000477850 296 ntBASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 SNX29P1-201ENST00000548357 1007 ntBASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 MIR6775-201ENST00000617557 69 ntBASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 COX11-210ENST00000639671 696 ntBASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM43Q96BQ3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AP000974.1-201ENST00000623909 2387 ntBASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CTBP2P3-201ENST00000585629 1255 ntBASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AC099568.2-201ENST00000609194 695 ntBASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM43Q96BQ3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 AC114501.2-201ENST00000439631 535 ntBASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 MYCLP2-201ENST00000449268 967 ntBASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 ELK1P1-201ENST00000485699 580 ntBASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 AC098859.1-201ENST00000502915 1238 ntBASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM43Q96BQ3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM43Q96BQ3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM43Q96BQ3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TRIM43Q96BQ3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms