Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 OR6D1P-203ENST00000641209 4860 ntBASIC16.44■□□□□ 0.22
LMX1AQ8TE12 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.44■□□□□ 0.22
LMX1AQ8TE12 BCRP1-201ENST00000444246 691 ntBASIC16.44■□□□□ 0.22
LMX1AQ8TE12 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 KRT8P23-201ENST00000560090 1207 ntBASIC16.44■□□□□ 0.22
LMX1AQ8TE12 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 AL096865.1-201ENST00000606796 927 ntBASIC16.44■□□□□ 0.22
LMX1AQ8TE12 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 PMS2P4-201ENST00000412466 1052 ntBASIC16.43■□□□□ 0.22
LMX1AQ8TE12 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 AC015911.4-201ENST00000588022 1070 ntBASIC16.43■□□□□ 0.22
LMX1AQ8TE12 AP001059.3-201ENST00000619053 235 ntBASIC16.43■□□□□ 0.22
LMX1AQ8TE12 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 KRT8P49-201ENST00000604166 1432 ntBASIC16.43■□□□□ 0.22
LMX1AQ8TE12 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LMX1AQ8TE12 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 GPS2P2-201ENST00000430745 888 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC093214.1-201ENST00000511688 1107 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC069262.1-201ENST00000539058 672 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 LINC01225-203ENST00000563550 1244 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1AQ8TE12 AC007613.1-201ENST00000572811 2597 ntBASIC16.42■□□□□ 0.22
LMX1AQ8TE12 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms