Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 IGLL3P-201ENST00000412472 434 ntBASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 FAM185BP-201ENST00000443595 716 ntBASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 KRT18P2-201ENST00000447938 1258 ntBASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 HCG4B-203ENST00000450128 991 ntBASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCUBE3Q8IX30 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CXCL1P1-201ENST00000502804 216 ntBASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 AC009053.2-201ENST00000563701 2365 ntBASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.79■□□□□ 0.44
SCUBE3Q8IX30 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 AC011676.5-201ENST00000624864 2660 ntBASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 NKILA-202ENST00000614771 2598 ntBASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 MIR940-201ENST00000401276 94 ntBASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.78■□□□□ 0.44
SCUBE3Q8IX30 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms